PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021229.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family RAV
Protein Properties Length: 294aa    MW: 32832.1 Da    PI: 9.1796
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021229.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.52.1e-103783355
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +kG+   + +grW A+I++      + r++lg+f   e Aa+ ++ a+++++g
  Do021229.1 37 FKGIVLQP-TGRWGAQIYEG-----HERVWLGTFPDQETAARDYDVAALRYRG 83
                79999999.9*********3.....6*************************97 PP

2B389.13.5e-28146236184
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                 f+k+ tpsdv+k++rl++p+k++e++       ++ + +++ l +ed++g++W+++++++++s++yvl+kGW +Fv+++gL++gD+v F++
  Do021229.1 146 FEKTVTPSDVGKLNRLIVPRKHVERYlpplsttEKATGKGVVLAIEDSEGKVWRFRYSFWNSSQSYVLSKGWMRFVQEKGLRAGDTVSFSR 236
                 99****************************99977788999************************************************94 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-173692IPR001471AP2/ERF domain
SMARTSM003809.5E-213697IPR001471AP2/ERF domain
PROSITE profilePS5103218.8083691IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-143792IPR016177DNA-binding domain
CDDcd000187.45E-193792No hitNo description
PfamPF008479.4E-63783IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.6E-36142256IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-30143252IPR015300DNA-binding pseudobarrel domain
CDDcd100174.93E-29144236No hitNo description
PfamPF023626.5E-25146236IPR003340B3 DNA binding domain
SMARTSM010196.8E-21146253IPR003340B3 DNA binding domain
PROSITE profilePS5086314.508146252IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MMESGSTETG LAAMDSSKES GDNDLQVQGP RQPLRSFKGI VLQPTGRWGA QIYEGHERVW  60
LGTFPDQETA ARDYDVAALR YRGWEAVTNF PAERAHKGQQ PLAFLAAHSK SEIVDMLRNH  120
TYADELRQGI RRGVPAPPAW ARVPLFEKTV TPSDVGKLNR LIVPRKHVER YLPPLSTTEK  180
ATGKGVVLAI EDSEGKVWRF RYSFWNSSQS YVLSKGWMRF VQEKGLRAGD TVSFSRWTFG  240
PGERLLIDYR KKPEEEDAGM ADAIAAVQAP VVKIFGVDIA VGGREAREEH MASS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-3914525213117DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971642.11e-144PREDICTED: AP2/ERF and B3 domain-containing protein Os01g0141000
SwissprotQ9AWS73e-95Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLT1NBI81e-103T1NBI8_TRIUA; Uncharacterized protein
STRINGMLOC_56567.13e-99(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.25e-86related to ABI3/VP1 2